Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 AC103564.2-201ENST00000432853 1299 ntBASIC12.18□□□□□ -0.46
SMKR1H3BMG3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 GCSHP5-201ENST00000443090 522 ntBASIC12.18□□□□□ -0.46
SMKR1H3BMG3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 AC122714.2-201ENST00000502787 707 ntBASIC12.18□□□□□ -0.46
SMKR1H3BMG3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 GGT3P-204ENST00000453783 1664 ntBASIC12.18□□□□□ -0.46
SMKR1H3BMG3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 PCDHA3-202ENST00000532566 4594 ntBASIC12.18□□□□□ -0.46
SMKR1H3BMG3 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SMKR1H3BMG3 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 DUX4L17-201ENST00000557360 1267 ntBASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AC005332.3-201ENST00000589904 676 ntBASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AC140113.3-201ENST00000605663 199 ntBASIC12.17□□□□□ -0.46
SMKR1H3BMG3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AL009178.2-201ENST00000597278 2719 ntBASIC12.17□□□□□ -0.46
SMKR1H3BMG3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 AL021920.2-201ENST00000624828 1351 ntBASIC12.17□□□□□ -0.46
SMKR1H3BMG3 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SMKR1H3BMG3 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.16□□□□□ -0.46
SMKR1H3BMG3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms