Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PCDHA3Q9Y5H8 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDHA3Q9Y5H8 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 AC073648.2-201ENST00000510116 352 ntBASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 AC008735.5-201ENST00000623544 497 ntBASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDHA3Q9Y5H8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 OR7E47P-204ENST00000575924 449 ntBASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 IFNL4P1-201ENST00000607083 540 ntBASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PCDHA3Q9Y5H8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AC105339.3-201ENST00000560043 636 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 CLEC4GP1-201ENST00000596555 870 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AL356488.2-201ENST00000602755 427 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 MIR1199-201ENST00000621445 119 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AC012313.10-201ENST00000623509 926 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms