Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 SLC25A1P3-201ENST00000395415 828 ntBASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 MEP1AP4-201ENST00000423244 1087 ntBASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 GNAQP1-201ENST00000444815 1067 ntBASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 SERBP1P3-201ENST00000459980 809 ntBASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PCDHGA1Q9Y5H4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 SPDYE19P-201ENST00000338590 713 ntBASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AC079776.1-201ENST00000401540 1152 ntBASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AL023806.1-201ENST00000603994 1649 ntBASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 AC099398.1-201ENST00000567919 2776 ntBASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDHGA1Q9Y5H4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 MIR1909-201ENST00000411312 80 ntBASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AC114501.2-201ENST00000439631 535 ntBASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AC055876.2-201ENST00000531834 546 ntBASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 KRT17P8-201ENST00000540749 863 ntBASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDHGA1Q9Y5H4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms