Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC104640.1-201ENST00000562617 2109 ntBASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 MIR648-201ENST00000385046 94 ntBASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 LINC00554-201ENST00000564841 3011 ntBASIC18.12■□□□□ 0.49
LIMA1Q9UHB6 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 AL596257.1-201ENST00000641463 2694 ntBASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 RPS2P1-201ENST00000434010 821 ntBASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 PGM5P2-202ENST00000637225 1043 ntBASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 AC005622.1-201ENST00000636801 1703 ntBASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
LIMA1Q9UHB6 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 OR7E14P-202ENST00000530490 1290 ntBASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 OR7E47P-204ENST00000575924 449 ntBASIC18.1■□□□□ 0.49
LIMA1Q9UHB6 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms