Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 AC140658.5-201ENST00000438532 169 ntBASIC17.75■□□□□ 0.43
SIX2Q9NPC8 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 KRT19P2-202ENST00000557173 1012 ntBASIC17.75■□□□□ 0.43
SIX2Q9NPC8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SIX2Q9NPC8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 BCAR1-209ENST00000546196 1340 ntBASIC17.74■□□□□ 0.43
SIX2Q9NPC8 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 AC007064.4-201ENST00000637740 555 ntBASIC17.74■□□□□ 0.43
SIX2Q9NPC8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.74■□□□□ 0.43
SIX2Q9NPC8 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AC132872.4-202ENST00000622924 2756 ntBASIC17.73■□□□□ 0.43
SIX2Q9NPC8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AC093724.1-201ENST00000448659 1027 ntBASIC17.73■□□□□ 0.43
SIX2Q9NPC8 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SIX2Q9NPC8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SIX2Q9NPC8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SIX2Q9NPC8 CDC14C-201ENST00000428251 1719 ntBASIC17.72■□□□□ 0.43
SIX2Q9NPC8 AC112504.1-201ENST00000623415 1841 ntBASIC17.72■□□□□ 0.43
SIX2Q9NPC8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms