Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AC091607.1-201ENST00000490318 1060 ntBASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 PCDHA3-202ENST00000532566 4594 ntBASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AL365203.3-201ENST00000609742 2057 ntBASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AC092364.2-201ENST00000596710 2692 ntBASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 AD001527.2-201ENST00000622994 785 ntBASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CHMP1AQ9HD42 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 SIGLEC30P-201ENST00000455569 941 ntBASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 AL121956.5-201ENST00000625261 221 ntBASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CHMP1AQ9HD42 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHMP1AQ9HD42 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms