Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 AC004790.2-201ENST00000623588 572 ntBASIC17.1■□□□□ 0.33
USP29Q9HBJ7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP29Q9HBJ7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 HCG4-201ENST00000418983 998 ntBASIC17.09■□□□□ 0.33
USP29Q9HBJ7 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 AC108073.2-201ENST00000464002 357 ntBASIC17.09■□□□□ 0.33
USP29Q9HBJ7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.09■□□□□ 0.33
USP29Q9HBJ7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP29Q9HBJ7 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP29Q9HBJ7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 MRPL20P1-201ENST00000400819 433 ntBASIC17.08■□□□□ 0.32
USP29Q9HBJ7 MCCD1P2-201ENST00000423228 335 ntBASIC17.08■□□□□ 0.32
USP29Q9HBJ7 FAM185BP-201ENST00000443595 716 ntBASIC17.08■□□□□ 0.32
USP29Q9HBJ7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 ACTL9-202ENST00000612068 1252 ntBASIC17.08■□□□□ 0.32
USP29Q9HBJ7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.08■□□□□ 0.32
USP29Q9HBJ7 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP29Q9HBJ7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms