Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 MIR1908-201ENST00000410394 80 ntBASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 USB1-202ENST00000423271 1217 ntTSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
SHANK3Q9BYB0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 INTS4P2-202ENST00000614726 2019 ntBASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK3Q9BYB0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 BOLA2P3-201ENST00000404566 256 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 RPL13P2-201ENST00000440687 659 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 TARDBPP1-201ENST00000442013 1203 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 CTBP2P5-201ENST00000454986 1264 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 GPR182-203ENST00000622922 591 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 KRT18P64-201ENST00000434946 1219 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 AC068587.3-201ENST00000526613 355 ntBASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC21.04■□□□□ 0.96
SHANK3Q9BYB0 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ABBA01031660.1-201ENST00000635219 756 ntBASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK3Q9BYB0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHANK3Q9BYB0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms