Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 RPS2P36-201ENST00000456516 831 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 VDAC1P7-201ENST00000462417 847 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 U62317.3-201ENST00000608319 855 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 GGT4P-201ENST00000623672 1708 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 BTBD6P1-201ENST00000412176 1267 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC005077.2-201ENST00000449786 690 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 TMEM198B-204ENST00000484016 896 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC26.87■■□□□ 1.89
IFT140Q96RY7 AC138627.1-207ENST00000641560 1006 ntBASIC26.87■■□□□ 1.89
IFT140Q96RY7 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 AC023310.1-201ENST00000554836 735 ntBASIC26.86■■□□□ 1.89
IFT140Q96RY7 AC025279.2-201ENST00000569730 653 ntBASIC26.86■■□□□ 1.89
IFT140Q96RY7 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
IFT140Q96RY7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC26.86■■□□□ 1.89
IFT140Q96RY7 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
IFT140Q96RY7 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 SPCS2P2-201ENST00000603270 608 ntBASIC26.85■■□□□ 1.89
IFT140Q96RY7 AC128714.1-201ENST00000637035 887 ntBASIC26.85■■□□□ 1.89
IFT140Q96RY7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
IFT140Q96RY7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
IFT140Q96RY7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
IFT140Q96RY7 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
IFT140Q96RY7 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 TARDBPP1-201ENST00000442013 1203 ntBASIC26.84■■□□□ 1.89
IFT140Q96RY7 AHRR-211ENST00000515206 462 ntTSL 5 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 AC020914.3-201ENST00000594712 304 ntBASIC26.84■■□□□ 1.89
IFT140Q96RY7 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC26.84■■□□□ 1.89
IFT140Q96RY7 AL031731.1-201ENST00000642131 2094 ntBASIC26.84■■□□□ 1.89
IFT140Q96RY7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
IFT140Q96RY7 GRN-214ENST00000589265 1632 ntTSL 5 BASIC26.84■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms