Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 FAM86C2P-203ENST00000528684 1004 ntBASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 AC092171.3-201ENST00000610122 2651 ntBASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
PTCHD1Q96NR3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.1
PTCHD1Q96NR3 SNX33P1-201ENST00000592116 1762 ntBASIC15.64■□□□□ 0.1
PTCHD1Q96NR3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 AL355306.1-201ENST00000415580 579 ntBASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 RARRES2P8-201ENST00000566335 367 ntBASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PTCHD1Q96NR3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 TFAMP1-201ENST00000412727 736 ntBASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.63■□□□□ 0.09
PTCHD1Q96NR3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms