Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 METTL21AP1-201ENST00000438852 635 ntBASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AC109322.1-201ENST00000524499 1264 ntBASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AL512356.2-201ENST00000546955 174 ntBASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 AP001059.3-201ENST00000619053 235 ntBASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.53■□□□□ 0.24
ECHDC3Q96DC8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 ME2P1-201ENST00000426028 1970 ntBASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 SPDYE14P-201ENST00000442619 822 ntBASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AC098859.1-201ENST00000502915 1238 ntBASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 LINC00628-201ENST00000628516 1289 ntBASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
ECHDC3Q96DC8 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ECHDC3Q96DC8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 AC009053.2-201ENST00000563701 2365 ntBASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.51■□□□□ 0.23
ECHDC3Q96DC8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms