Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.52■□□□□ 0.72
BRF1Q92994 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.52■□□□□ 0.72
BRF1Q92994 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.52■□□□□ 0.72
BRF1Q92994 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
BRF1Q92994 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.52■□□□□ 0.72
BRF1Q92994 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 AC007064.4-201ENST00000637740 555 ntBASIC19.52■□□□□ 0.72
BRF1Q92994 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 ZNF259P1-201ENST00000407656 1365 ntBASIC19.52■□□□□ 0.72
BRF1Q92994 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
BRF1Q92994 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.52■□□□□ 0.71
BRF1Q92994 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
BRF1Q92994 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.52■□□□□ 0.71
BRF1Q92994 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.51■□□□□ 0.71
BRF1Q92994 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.51■□□□□ 0.71
BRF1Q92994 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
BRF1Q92994 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.51■□□□□ 0.71
BRF1Q92994 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.51■□□□□ 0.71
BRF1Q92994 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.51■□□□□ 0.71
BRF1Q92994 KRT19P2-202ENST00000557173 1012 ntBASIC19.51■□□□□ 0.71
BRF1Q92994 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.51■□□□□ 0.71
BRF1Q92994 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 AC140113.2-201ENST00000604370 208 ntBASIC19.51■□□□□ 0.71
BRF1Q92994 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
BRF1Q92994 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.51■□□□□ 0.71
BRF1Q92994 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BRF1Q92994 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
BRF1Q92994 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
BRF1Q92994 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.5■□□□□ 0.71
BRF1Q92994 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.5■□□□□ 0.71
BRF1Q92994 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
BRF1Q92994 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
BRF1Q92994 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.5■□□□□ 0.71
BRF1Q92994 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.5■□□□□ 0.71
BRF1Q92994 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.5■□□□□ 0.71
BRF1Q92994 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 LINC01144-201ENST00000626198 1710 ntBASIC19.5■□□□□ 0.71
BRF1Q92994 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
BRF1Q92994 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRF1Q92994 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms