Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.24■□□□□ 0.35
ATG4AQ8WYN0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 LAGE3P1-201ENST00000425356 484 ntBASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 RPS15P9-201ENST00000494093 319 ntBASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 AC107918.4-202ENST00000641623 219 ntBASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.23■□□□□ 0.35
ATG4AQ8WYN0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 RPS2P1-201ENST00000434010 821 ntBASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 AC006557.2-201ENST00000592985 1240 ntBASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ATG4AQ8WYN0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 AL353732.1-201ENST00000569618 1459 ntBASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ATG4AQ8WYN0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms