Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.18■□□□□ 0.18
VRK3Q8IV63 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC112482.1-201ENST00000492080 688 ntBASIC16.18■□□□□ 0.18
VRK3Q8IV63 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AL161645.1-201ENST00000622716 1255 ntBASIC16.18■□□□□ 0.18
VRK3Q8IV63 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 LINC01144-201ENST00000626198 1710 ntBASIC16.18■□□□□ 0.18
VRK3Q8IV63 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VRK3Q8IV63 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.18■□□□□ 0.18
VRK3Q8IV63 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 RPSAP43-201ENST00000402237 625 ntBASIC16.17■□□□□ 0.18
VRK3Q8IV63 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 GPX1P2-201ENST00000429271 606 ntBASIC16.17■□□□□ 0.18
VRK3Q8IV63 AL671277.1-201ENST00000429656 993 ntBASIC16.17■□□□□ 0.18
VRK3Q8IV63 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 AC092865.5-201ENST00000545435 363 ntBASIC16.17■□□□□ 0.18
VRK3Q8IV63 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 RARRES2P8-201ENST00000566335 367 ntBASIC16.17■□□□□ 0.18
VRK3Q8IV63 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.17■□□□□ 0.18
VRK3Q8IV63 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VRK3Q8IV63 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.16■□□□□ 0.18
VRK3Q8IV63 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK3Q8IV63 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms