Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 RNA5SP410-201ENST00000516285 106 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 MIR5189-201ENST00000577370 114 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC116353.5-201ENST00000638148 1699 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 AL603756.1-201ENST00000606511 2163 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 BCRP2-202ENST00000447763 634 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 BCRP6-201ENST00000510112 632 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 BCRP7-201ENST00000511549 544 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC133552.6-201ENST00000613406 534 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 AP001350.2-201ENST00000625104 1094 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC006277.1-201ENST00000624348 1610 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AC103810.3-201ENST00000583567 96 ntBASIC13.59□□□□□ -0.23
VPS13CQ709C8 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13CQ709C8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13CQ709C8 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 AC007969.1-201ENST00000433675 447 ntBASIC13.58□□□□□ -0.23
VPS13CQ709C8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13CQ709C8 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13CQ709C8 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.58□□□□□ -0.23
VPS13CQ709C8 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13CQ709C8 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13CQ709C8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 AC005229.1-201ENST00000392885 409 ntBASIC13.58□□□□□ -0.24
VPS13CQ709C8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 FO681548.1-201ENST00000455617 1132 ntBASIC13.58□□□□□ -0.24
VPS13CQ709C8 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13CQ709C8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.58□□□□□ -0.24
VPS13CQ709C8 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms