Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AL596275.1-201ENST00000423464 877 ntBASIC14.91□□□□□ -0.02
CCDC58Q4VC31 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC58Q4VC31 AL359258.3-201ENST00000622910 2331 ntBASIC14.91□□□□□ -0.02
CCDC58Q4VC31 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.9□□□□□ -0.02
CCDC58Q4VC31 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC58Q4VC31 PMPCAP1-201ENST00000508114 1576 ntBASIC14.9□□□□□ -0.02
CCDC58Q4VC31 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 AC006277.1-201ENST00000624348 1610 ntBASIC14.89□□□□□ -0.03
CCDC58Q4VC31 AC002310.6-201ENST00000624451 1377 ntBASIC14.89□□□□□ -0.03
CCDC58Q4VC31 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 AL365209.1-201ENST00000624418 6473 ntBASIC14.89□□□□□ -0.03
CCDC58Q4VC31 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC58Q4VC31 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms