Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 AC104581.1-202ENST00000635932 2618 ntBASIC10.04□□□□□ -0.8
HSPG2P98160 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC10.04□□□□□ -0.8
HSPG2P98160 AL355864.2-201ENST00000447420 863 ntBASIC10.04□□□□□ -0.8
HSPG2P98160 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
HSPG2P98160 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
HSPG2P98160 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
HSPG2P98160 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 DEF8-202ENST00000418391 852 ntTSL 2 BASIC10.04□□□□□ -0.8
HSPG2P98160 RN7SL11P-201ENST00000471305 293 ntBASIC10.04□□□□□ -0.8
HSPG2P98160 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
HSPG2P98160 AL645939.5-201ENST00000606834 243 ntBASIC10.04□□□□□ -0.8
HSPG2P98160 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC10.04□□□□□ -0.8
HSPG2P98160 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
HSPG2P98160 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
HSPG2P98160 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC10.04□□□□□ -0.8
HSPG2P98160 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 FTLP10-202ENST00000505798 471 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 CFL1-206ENST00000527344 962 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AL354751.1-201ENST00000412768 1863 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 TARDBPP1-201ENST00000442013 1203 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 METTL26-214ENST00000614890 801 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AHCYP2-201ENST00000430630 1300 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms