Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH6P55285 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDH6P55285 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 PCGF3-213ENST00000620529 1899 ntBASIC17.28■□□□□ 0.36
CDH6P55285 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDH6P55285 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CDH6P55285 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.28■□□□□ 0.36
CDH6P55285 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH6P55285 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CDH6P55285 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CDH6P55285 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.27■□□□□ 0.36
CDH6P55285 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.27■□□□□ 0.36
CDH6P55285 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH6P55285 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.27■□□□□ 0.36
CDH6P55285 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH6P55285 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CDH6P55285 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDH6P55285 HMGA1P7-201ENST00000406908 502 ntBASIC17.27■□□□□ 0.36
CDH6P55285 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CDH6P55285 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDH6P55285 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH6P55285 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CDH6P55285 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.27■□□□□ 0.36
CDH6P55285 AC145285.3-201ENST00000564603 959 ntBASIC17.27■□□□□ 0.36
CDH6P55285 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.27■□□□□ 0.36
CDH6P55285 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH6P55285 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.27■□□□□ 0.35
CDH6P55285 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.27■□□□□ 0.35
CDH6P55285 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
CDH6P55285 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.27■□□□□ 0.35
CDH6P55285 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH6P55285 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CDH6P55285 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
CDH6P55285 IL9RP2-201ENST00000423948 1312 ntBASIC17.26■□□□□ 0.35
CDH6P55285 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.26■□□□□ 0.35
CDH6P55285 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CDH6P55285 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CDH6P55285 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.26■□□□□ 0.35
CDH6P55285 BX640515.1-201ENST00000617215 977 ntBASIC17.26■□□□□ 0.35
CDH6P55285 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.26■□□□□ 0.35
CDH6P55285 AC010507.1-201ENST00000633895 436 ntBASIC17.26■□□□□ 0.35
CDH6P55285 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 FER1L4-210ENST00000615531 5998 ntBASIC17.26■□□□□ 0.35
CDH6P55285 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.26■□□□□ 0.35
CDH6P55285 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH6P55285 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH6P55285 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH6P55285 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CDH6P55285 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH6P55285 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH6P55285 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms