Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 SIGLEC16-201ENST00000599858 1437 ntBASIC17.54■□□□□ 0.4
LIG3P49916 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 AL365203.3-201ENST00000609742 2057 ntBASIC17.54■□□□□ 0.4
LIG3P49916 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.54■□□□□ 0.4
LIG3P49916 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 AC092364.2-201ENST00000596710 2692 ntBASIC17.54■□□□□ 0.4
LIG3P49916 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LIG3P49916 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.53■□□□□ 0.4
LIG3P49916 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.53■□□□□ 0.4
LIG3P49916 AC002558.1-201ENST00000488906 803 ntBASIC17.53■□□□□ 0.4
LIG3P49916 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.53■□□□□ 0.4
LIG3P49916 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.53■□□□□ 0.4
LIG3P49916 AC025062.2-201ENST00000605477 670 ntBASIC17.53■□□□□ 0.4
LIG3P49916 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
LIG3P49916 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 HLA-J-201ENST00000462773 1622 ntBASIC17.53■□□□□ 0.4
LIG3P49916 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.53■□□□□ 0.4
LIG3P49916 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIG3P49916 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIG3P49916 REXO1L11P-201ENST00000620964 1927 ntBASIC17.53■□□□□ 0.4
LIG3P49916 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
LIG3P49916 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.52■□□□□ 0.4
LIG3P49916 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
LIG3P49916 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.52■□□□□ 0.4
LIG3P49916 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 KLF4P1-201ENST00000412782 1185 ntBASIC17.52■□□□□ 0.4
LIG3P49916 AL020989.1-201ENST00000422979 469 ntBASIC17.52■□□□□ 0.4
LIG3P49916 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.52■□□□□ 0.4
LIG3P49916 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.52■□□□□ 0.4
LIG3P49916 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.52■□□□□ 0.4
LIG3P49916 STK25P1-201ENST00000585406 838 ntBASIC17.52■□□□□ 0.4
LIG3P49916 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
LIG3P49916 AL022326.1-202ENST00000641533 845 ntBASIC17.52■□□□□ 0.4
LIG3P49916 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIG3P49916 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.52■□□□□ 0.4
LIG3P49916 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.52■□□□□ 0.4
LIG3P49916 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
LIG3P49916 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIG3P49916 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.51■□□□□ 0.39
LIG3P49916 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.51■□□□□ 0.39
LIG3P49916 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIG3P49916 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms