Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.14■□□□□ 0.17
HNF4AP41235 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.14■□□□□ 0.17
HNF4AP41235 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.14■□□□□ 0.17
HNF4AP41235 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 AL512652.2-201ENST00000625156 1716 ntBASIC16.14■□□□□ 0.17
HNF4AP41235 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HNF4AP41235 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 ME2P1-201ENST00000426028 1970 ntBASIC16.13■□□□□ 0.17
HNF4AP41235 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 MIR940-201ENST00000401276 94 ntBASIC16.13■□□□□ 0.17
HNF4AP41235 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 PRSS29P-201ENST00000440800 595 ntBASIC16.13■□□□□ 0.17
HNF4AP41235 VN2R19P-201ENST00000442399 1052 ntBASIC16.13■□□□□ 0.17
HNF4AP41235 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.13■□□□□ 0.17
HNF4AP41235 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 GGT3P-204ENST00000453783 1664 ntBASIC16.13■□□□□ 0.17
HNF4AP41235 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
HNF4AP41235 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HNF4AP41235 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HNF4AP41235 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.13■□□□□ 0.17
HNF4AP41235 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HNF4AP41235 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
HNF4AP41235 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 AL596257.1-201ENST00000641463 2694 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 AL671710.1-201ENST00000610245 2349 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 MST1L-201ENST00000442552 2185 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.12■□□□□ 0.17
HNF4AP41235 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.12■□□□□ 0.17
HNF4AP41235 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 AC034105.1-201ENST00000563488 319 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.12■□□□□ 0.17
HNF4AP41235 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.12■□□□□ 0.17
HNF4AP41235 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HNF4AP41235 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HNF4AP41235 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HNF4AP41235 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HNF4AP41235 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms