Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RPA3P35244 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
RPA3P35244 SIGLEC16-201ENST00000599858 1437 ntBASIC16.83■□□□□ 0.28
RPA3P35244 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.83■□□□□ 0.28
RPA3P35244 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RPA3P35244 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.83■□□□□ 0.28
RPA3P35244 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
RPA3P35244 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
RPA3P35244 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RPA3P35244 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
RPA3P35244 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.83■□□□□ 0.28
RPA3P35244 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.82■□□□□ 0.28
RPA3P35244 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RPA3P35244 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
RPA3P35244 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.82■□□□□ 0.28
RPA3P35244 FAAHP1-202ENST00000446499 1238 ntBASIC16.82■□□□□ 0.28
RPA3P35244 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.82■□□□□ 0.28
RPA3P35244 NKAPP1-205ENST00000585790 367 ntBASIC16.82■□□□□ 0.28
RPA3P35244 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.82■□□□□ 0.28
RPA3P35244 AC073592.4-201ENST00000623827 446 ntBASIC16.82■□□□□ 0.28
RPA3P35244 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.82■□□□□ 0.28
RPA3P35244 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.82■□□□□ 0.28
RPA3P35244 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RPA3P35244 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
RPA3P35244 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.81■□□□□ 0.28
RPA3P35244 AC006277.1-201ENST00000624348 1610 ntBASIC16.81■□□□□ 0.28
RPA3P35244 AC148477.5-201ENST00000625164 1645 ntBASIC16.81■□□□□ 0.28
RPA3P35244 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 AP002414.1-201ENST00000391405 1147 ntBASIC16.81■□□□□ 0.28
RPA3P35244 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.81■□□□□ 0.28
RPA3P35244 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 ACTG1P4-201ENST00000425123 1122 ntBASIC16.81■□□□□ 0.28
RPA3P35244 TPM4P1-201ENST00000436100 807 ntBASIC16.81■□□□□ 0.28
RPA3P35244 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.81■□□□□ 0.28
RPA3P35244 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.81■□□□□ 0.28
RPA3P35244 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.81■□□□□ 0.28
RPA3P35244 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RPA3P35244 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.81■□□□□ 0.28
RPA3P35244 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 GGT3P-204ENST00000453783 1664 ntBASIC16.81■□□□□ 0.28
RPA3P35244 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RPA3P35244 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RPA3P35244 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.8■□□□□ 0.28
RPA3P35244 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.8■□□□□ 0.28
RPA3P35244 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 KRT8P49-201ENST00000604166 1432 ntBASIC16.8■□□□□ 0.28
RPA3P35244 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.8■□□□□ 0.28
RPA3P35244 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.8■□□□□ 0.28
RPA3P35244 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
RPA3P35244 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RPA3P35244 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms