Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTPN4P29074 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 AC006538.1-201ENST00000567905 1585 ntBASIC16.73■□□□□ 0.27
PTPN4P29074 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 POLD2P1-201ENST00000511220 997 ntBASIC16.73■□□□□ 0.27
PTPN4P29074 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 TERC-201ENST00000602385 541 ntBASIC16.73■□□□□ 0.27
PTPN4P29074 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PTPN4P29074 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.73■□□□□ 0.27
PTPN4P29074 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.73■□□□□ 0.27
PTPN4P29074 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PTPN4P29074 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTPN4P29074 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 PMS2P7-201ENST00000506558 1336 ntBASIC16.72■□□□□ 0.27
PTPN4P29074 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTPN4P29074 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PTPN4P29074 MIR940-201ENST00000401276 94 ntBASIC16.72■□□□□ 0.27
PTPN4P29074 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PTPN4P29074 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.72■□□□□ 0.27
PTPN4P29074 AC007967.3-201ENST00000434308 558 ntBASIC16.72■□□□□ 0.27
PTPN4P29074 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
PTPN4P29074 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
PTPN4P29074 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.72■□□□□ 0.27
PTPN4P29074 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PTPN4P29074 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PTPN4P29074 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.71■□□□□ 0.27
PTPN4P29074 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PTPN4P29074 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 NKAPP1-205ENST00000585790 367 ntBASIC16.71■□□□□ 0.27
PTPN4P29074 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTPN4P29074 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.71■□□□□ 0.27
PTPN4P29074 AC025062.2-201ENST00000605477 670 ntBASIC16.71■□□□□ 0.27
PTPN4P29074 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms