Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 KRTAP19-9P-201ENST00000421795 191 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 CFL1-206ENST00000527344 962 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC120045.2-201ENST00000567334 178 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AL139011.1-202ENST00000642063 584 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AHCYP2-201ENST00000430630 1300 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 AL021920.2-201ENST00000624828 1351 ntBASIC12.64□□□□□ -0.39
COL6A5A8TX70 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL6A5A8TX70 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
COL6A5A8TX70 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 BAATP1-201ENST00000412284 1225 ntBASIC12.63□□□□□ -0.39
COL6A5A8TX70 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 MIR4741-201ENST00000579822 90 ntBASIC12.63□□□□□ -0.39
COL6A5A8TX70 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 USE1-206ENST00000595101 1776 ntTSL 2 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 CYP46A4P-201ENST00000414953 267 ntBASIC12.63□□□□□ -0.39
COL6A5A8TX70 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 MIR3147-201ENST00000577811 66 ntBASIC12.63□□□□□ -0.39
COL6A5A8TX70 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 LYSMD4-203ENST00000378904 2122 ntBASIC12.63□□□□□ -0.39
COL6A5A8TX70 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC12.63□□□□□ -0.39
COL6A5A8TX70 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL6A5A8TX70 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 AC132192.2-201ENST00000596206 1147 ntBASIC12.62□□□□□ -0.39
COL6A5A8TX70 AP000346.4-201ENST00000614827 381 ntBASIC12.62□□□□□ -0.39
COL6A5A8TX70 AC138951.2-201ENST00000623455 1161 ntBASIC12.62□□□□□ -0.39
COL6A5A8TX70 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC12.62□□□□□ -0.39
COL6A5A8TX70 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL6A5A8TX70 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms