Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL20A1Q9P218 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL20A1Q9P218 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.65■□□□□ 0.58
COL20A1Q9P218 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL20A1Q9P218 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL20A1Q9P218 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL20A1Q9P218 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL20A1Q9P218 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.64■□□□□ 0.58
COL20A1Q9P218 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
COL20A1Q9P218 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL20A1Q9P218 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.64■□□□□ 0.57
COL20A1Q9P218 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 HLA-V-204ENST00000476601 1289 ntBASIC18.64■□□□□ 0.57
COL20A1Q9P218 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 TEX28P1-201ENST00000613479 1221 ntBASIC18.64■□□□□ 0.57
COL20A1Q9P218 TEX28P2-201ENST00000617764 1221 ntBASIC18.64■□□□□ 0.57
COL20A1Q9P218 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 AL035456.1-201ENST00000456064 1369 ntBASIC18.64■□□□□ 0.57
COL20A1Q9P218 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL20A1Q9P218 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL20A1Q9P218 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.63■□□□□ 0.57
COL20A1Q9P218 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL20A1Q9P218 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL20A1Q9P218 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AC026471.1-201ENST00000564629 3026 ntBASIC18.62■□□□□ 0.57
COL20A1Q9P218 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 LINC02560-201ENST00000596379 459 ntBASIC18.62■□□□□ 0.57
COL20A1Q9P218 AL844908.2-201ENST00000609461 460 ntBASIC18.62■□□□□ 0.57
COL20A1Q9P218 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL20A1Q9P218 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.62■□□□□ 0.57
COL20A1Q9P218 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms