Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USP28Q96RU2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP28Q96RU2 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19■□□□□ 0.63
USP28Q96RU2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19■□□□□ 0.63
USP28Q96RU2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 MRPL20P1-201ENST00000400819 433 ntBASIC18.99■□□□□ 0.63
USP28Q96RU2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 POU5F1P6-201ENST00000466990 990 ntBASIC18.99■□□□□ 0.63
USP28Q96RU2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.99■□□□□ 0.63
USP28Q96RU2 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.99■□□□□ 0.63
USP28Q96RU2 AC117500.6-201ENST00000624871 588 ntBASIC18.99■□□□□ 0.63
USP28Q96RU2 AC005593.1-201ENST00000624894 515 ntBASIC18.99■□□□□ 0.63
USP28Q96RU2 FAM215A-202ENST00000632077 792 ntBASIC18.99■□□□□ 0.63
USP28Q96RU2 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.99■□□□□ 0.63
USP28Q96RU2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
USP28Q96RU2 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USP28Q96RU2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USP28Q96RU2 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
USP28Q96RU2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.98■□□□□ 0.63
USP28Q96RU2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USP28Q96RU2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.98■□□□□ 0.63
USP28Q96RU2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 AF186996.4-201ENST00000467186 377 ntBASIC18.98■□□□□ 0.63
USP28Q96RU2 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.98■□□□□ 0.63
USP28Q96RU2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.98■□□□□ 0.63
USP28Q96RU2 AL049840.3-201ENST00000602669 611 ntBASIC18.98■□□□□ 0.63
USP28Q96RU2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.98■□□□□ 0.63
USP28Q96RU2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.98■□□□□ 0.63
USP28Q96RU2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USP28Q96RU2 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP28Q96RU2 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.98■□□□□ 0.63
USP28Q96RU2 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USP28Q96RU2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.97■□□□□ 0.63
USP28Q96RU2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms