Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 AC073869.1-201ENST00000415574 2762 ntBASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 SDHAP2-201ENST00000455183 2001 ntBASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 AC006449.6-201ENST00000612330 2296 ntBASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CCDC28AQ8IWP9 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 REXO1L1P-202ENST00000608646 1974 ntBASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CCDC28AQ8IWP9 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms