Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.76
LINC00643Q86TS7 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 FGD5P1-202ENST00000614866 2498 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 LINC01230-201ENST00000625222 3017 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 ABHD17AP4-201ENST00000411545 909 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 POU5F1P3-201ENST00000428824 1078 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 MCCD1P1-208ENST00000445732 328 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 KRT8P41-201ENST00000533985 1514 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 KRT8P33-201ENST00000508125 1423 ntBASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
LINC00643Q86TS7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
LINC00643Q86TS7 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC10.31□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms