Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.92■□□□□ 0.46
KRT39Q6A163 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.92■□□□□ 0.46
KRT39Q6A163 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
KRT39Q6A163 AC092364.2-201ENST00000596710 2692 ntBASIC17.92■□□□□ 0.46
KRT39Q6A163 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.92■□□□□ 0.46
KRT39Q6A163 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.91■□□□□ 0.46
KRT39Q6A163 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 CROCCP1-201ENST00000426910 5675 ntBASIC17.91■□□□□ 0.46
KRT39Q6A163 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
KRT39Q6A163 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.91■□□□□ 0.46
KRT39Q6A163 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.91■□□□□ 0.46
KRT39Q6A163 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 AC040169.1-201ENST00000565382 521 ntBASIC17.91■□□□□ 0.46
KRT39Q6A163 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.91■□□□□ 0.46
KRT39Q6A163 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
KRT39Q6A163 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
KRT39Q6A163 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
KRT39Q6A163 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
KRT39Q6A163 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
KRT39Q6A163 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
KRT39Q6A163 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 AC023274.1-201ENST00000418278 595 ntBASIC17.9■□□□□ 0.46
KRT39Q6A163 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.9■□□□□ 0.46
KRT39Q6A163 POU5F1P6-201ENST00000466990 990 ntBASIC17.9■□□□□ 0.46
KRT39Q6A163 POLD2P1-201ENST00000511220 997 ntBASIC17.9■□□□□ 0.46
KRT39Q6A163 PGAM5P1-201ENST00000518923 814 ntBASIC17.9■□□□□ 0.46
KRT39Q6A163 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.9■□□□□ 0.46
KRT39Q6A163 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.9■□□□□ 0.46
KRT39Q6A163 AP002472.1-201ENST00000577490 586 ntBASIC17.9■□□□□ 0.46
KRT39Q6A163 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.9■□□□□ 0.46
KRT39Q6A163 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.9■□□□□ 0.46
KRT39Q6A163 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
KRT39Q6A163 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
KRT39Q6A163 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.9■□□□□ 0.46
KRT39Q6A163 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
KRT39Q6A163 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
KRT39Q6A163 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.89■□□□□ 0.46
KRT39Q6A163 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
KRT39Q6A163 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms