Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AL035633.1-201ENST00000406139 838 ntBASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AC005498.2-205ENST00000593218 784 ntBASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AC009093.7-201ENST00000623853 1223 ntBASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 AL645728.2-201ENST00000641974 660 ntBASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC144BQ3MJ40 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 FAM86C2P-203ENST00000528684 1004 ntBASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC144BQ3MJ40 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC144BQ3MJ40 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 FAM86GP-201ENST00000448322 971 ntBASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SPDYE11-202ENST00000450699 704 ntBASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SPDYE9P-201ENST00000570642 692 ntBASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SPDYE10P-202ENST00000612005 668 ntBASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 SPDYE8P-202ENST00000612377 668 ntBASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC144BQ3MJ40 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms