Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.99■□□□□ 0.15
COL28A1Q2UY09 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 IGHV3-72-202ENST00000621503 303 ntBASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AC068587.10-201ENST00000641210 219 ntBASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC027369.6-201ENST00000525520 931 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 FAM8A2P-201ENST00000528813 1142 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC022144.1-201ENST00000602255 1580 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AL139327.4-201ENST00000612362 153 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AL162274.1-201ENST00000617191 1098 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC100757.3-201ENST00000622361 1406 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AL162727.3-201ENST00000635661 2787 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 CROCCP1-201ENST00000426910 5675 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 LYSMD4-203ENST00000378904 2122 ntBASIC15.98■□□□□ 0.15
COL28A1Q2UY09 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL28A1Q2UY09 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 AL138688.1-201ENST00000624851 1594 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 AC079776.1-201ENST00000401540 1152 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 AC004945.1-201ENST00000416738 983 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 INE1-201ENST00000456273 945 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 STK25P1-201ENST00000585406 838 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 AL590560.3-201ENST00000623350 461 ntBASIC15.97■□□□□ 0.15
COL28A1Q2UY09 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
COL28A1Q2UY09 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms