Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NEK3P51956 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.17■□□□□ 0.34
NEK3P51956 AC022188.1-201ENST00000620960 1664 ntBASIC17.16■□□□□ 0.34
NEK3P51956 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
NEK3P51956 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.16■□□□□ 0.34
NEK3P51956 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
NEK3P51956 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.16■□□□□ 0.34
NEK3P51956 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.16■□□□□ 0.34
NEK3P51956 AC112482.1-201ENST00000492080 688 ntBASIC17.16■□□□□ 0.34
NEK3P51956 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.16■□□□□ 0.34
NEK3P51956 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.16■□□□□ 0.34
NEK3P51956 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.16■□□□□ 0.34
NEK3P51956 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 AC023141.13-201ENST00000604991 943 ntBASIC17.16■□□□□ 0.34
NEK3P51956 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.16■□□□□ 0.34
NEK3P51956 AC092850.2-201ENST00000623821 2697 ntBASIC17.16■□□□□ 0.34
NEK3P51956 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.16■□□□□ 0.34
NEK3P51956 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.16■□□□□ 0.34
NEK3P51956 AC129492.6-201ENST00000611383 1305 ntBASIC17.16■□□□□ 0.34
NEK3P51956 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
NEK3P51956 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NEK3P51956 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
NEK3P51956 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
NEK3P51956 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NEK3P51956 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.15■□□□□ 0.34
NEK3P51956 AC007950.2-201ENST00000615045 2347 ntBASIC17.15■□□□□ 0.34
NEK3P51956 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
NEK3P51956 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.15■□□□□ 0.34
NEK3P51956 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.15■□□□□ 0.34
NEK3P51956 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NEK3P51956 KRT19P2-202ENST00000557173 1012 ntBASIC17.15■□□□□ 0.34
NEK3P51956 PDPK2P-202ENST00000562415 1191 ntBASIC17.15■□□□□ 0.34
NEK3P51956 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.15■□□□□ 0.34
NEK3P51956 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.15■□□□□ 0.34
NEK3P51956 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
NEK3P51956 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NEK3P51956 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NEK3P51956 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
NEK3P51956 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
NEK3P51956 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 AC132872.4-202ENST00000622924 2756 ntBASIC17.14■□□□□ 0.33
NEK3P51956 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.14■□□□□ 0.33
NEK3P51956 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.14■□□□□ 0.33
NEK3P51956 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.14■□□□□ 0.33
NEK3P51956 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.14■□□□□ 0.33
NEK3P51956 FAM185BP-201ENST00000443595 716 ntBASIC17.14■□□□□ 0.33
NEK3P51956 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.14■□□□□ 0.33
NEK3P51956 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.14■□□□□ 0.33
NEK3P51956 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.14■□□□□ 0.33
NEK3P51956 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
NEK3P51956 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NEK3P51956 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms