Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.97■□□□□ 0.63
SMARCA1P28370 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.97■□□□□ 0.63
SMARCA1P28370 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 HLA-H-201ENST00000383620 1096 ntBASIC18.97■□□□□ 0.63
SMARCA1P28370 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.97■□□□□ 0.63
SMARCA1P28370 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.97■□□□□ 0.63
SMARCA1P28370 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 LINC00628-201ENST00000628516 1289 ntBASIC18.97■□□□□ 0.63
SMARCA1P28370 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SMARCA1P28370 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.97■□□□□ 0.63
SMARCA1P28370 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 AP3S2-216ENST00000617003 1561 ntBASIC18.97■□□□□ 0.63
SMARCA1P28370 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 AC009053.2-201ENST00000563701 2365 ntBASIC18.97■□□□□ 0.63
SMARCA1P28370 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.97■□□□□ 0.63
SMARCA1P28370 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.97■□□□□ 0.63
SMARCA1P28370 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMARCA1P28370 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 AL592424.1-201ENST00000563624 1536 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 RBPMS2P1-201ENST00000437762 623 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 SPDYE14P-201ENST00000442619 822 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 AC026150.2-201ENST00000564693 1156 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.96■□□□□ 0.63
SMARCA1P28370 AC024267.1-201ENST00000582320 895 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 AL365330.1-201ENST00000607459 531 ntBASIC18.96■□□□□ 0.63
SMARCA1P28370 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.96■□□□□ 0.63
SMARCA1P28370 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.96■□□□□ 0.63
SMARCA1P28370 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.96■□□□□ 0.63
SMARCA1P28370 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.96■□□□□ 0.63
SMARCA1P28370 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMARCA1P28370 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.95■□□□□ 0.62
SMARCA1P28370 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SMARCA1P28370 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.95■□□□□ 0.62
SMARCA1P28370 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SMARCA1P28370 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.95■□□□□ 0.62
SMARCA1P28370 AC109322.1-201ENST00000524499 1264 ntBASIC18.95■□□□□ 0.62
SMARCA1P28370 RARRES2P9-201ENST00000565168 469 ntBASIC18.95■□□□□ 0.62
SMARCA1P28370 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.95■□□□□ 0.62
SMARCA1P28370 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.95■□□□□ 0.62
SMARCA1P28370 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SMARCA1P28370 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SMARCA1P28370 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SMARCA1P28370 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SMARCA1P28370 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms