Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL9A1P20849 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL9A1P20849 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.94■□□□□ 0.3
COL9A1P20849 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 AC091046.1-201ENST00000331871 207 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
COL9A1P20849 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.94■□□□□ 0.3
COL9A1P20849 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.94■□□□□ 0.3
COL9A1P20849 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.94■□□□□ 0.3
COL9A1P20849 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 MPDU1-223ENST00000582151 728 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 AC010319.3-201ENST00000597028 470 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.94■□□□□ 0.3
COL9A1P20849 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 FRMD8P1-201ENST00000440433 1524 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 AC016396.2-201ENST00000562575 1417 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 NEFHP1-201ENST00000412845 2629 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
COL9A1P20849 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.94■□□□□ 0.3
COL9A1P20849 AP3S2-216ENST00000617003 1561 ntBASIC16.94■□□□□ 0.3
COL9A1P20849 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL9A1P20849 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 AC131009.4-201ENST00000624048 1740 ntBASIC16.93■□□□□ 0.3
COL9A1P20849 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 MTND6P24-201ENST00000440466 518 ntBASIC16.93■□□□□ 0.3
COL9A1P20849 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.93■□□□□ 0.3
COL9A1P20849 RPL13AP20-201ENST00000459725 609 ntBASIC16.93■□□□□ 0.3
COL9A1P20849 AC008267.1-201ENST00000474858 1069 ntBASIC16.93■□□□□ 0.3
COL9A1P20849 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.93■□□□□ 0.3
COL9A1P20849 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC16.93■□□□□ 0.3
COL9A1P20849 AL138918.1-201ENST00000568306 659 ntBASIC16.93■□□□□ 0.3
COL9A1P20849 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
COL9A1P20849 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.93■□□□□ 0.3
COL9A1P20849 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.93■□□□□ 0.3
COL9A1P20849 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.93■□□□□ 0.3
COL9A1P20849 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.93■□□□□ 0.3
COL9A1P20849 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL9A1P20849 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 NOC2LP1-202ENST00000452600 2235 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 AC116353.5-201ENST00000638148 1699 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
COL9A1P20849 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.92■□□□□ 0.3
COL9A1P20849 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL9A1P20849 RN7SL769P-201ENST00000469386 295 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 SPDYE18-201ENST00000510091 1050 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.92■□□□□ 0.3
COL9A1P20849 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
COL9A1P20849 AC137695.1-201ENST00000604126 489 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.92■□□□□ 0.3
COL9A1P20849 AC244452.3-201ENST00000636814 210 ntBASIC16.92■□□□□ 0.3
COL9A1P20849 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL9A1P20849 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms