Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 FO538757.1-201ENST00000623083 1397 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 CYP4F24P-201ENST00000586049 1580 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1FO60840 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CACNA1FO60840 AC241585.1-201ENST00000433527 519 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC20.63■□□□□ 0.89
CACNA1FO60840 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC20.63■□□□□ 0.89
CACNA1FO60840 AL512361.1-201ENST00000554200 418 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CACNA1FO60840 AL390955.2-201ENST00000603032 514 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 AC106028.4-201ENST00000614509 607 ntBASIC20.63■□□□□ 0.89
CACNA1FO60840 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.63■□□□□ 0.89
CACNA1FO60840 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CACNA1FO60840 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CACNA1FO60840 AL035456.1-201ENST00000456064 1369 ntBASIC20.62■□□□□ 0.89
CACNA1FO60840 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.62■□□□□ 0.89
CACNA1FO60840 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.62■□□□□ 0.89
CACNA1FO60840 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CACNA1FO60840 AL844908.2-201ENST00000609461 460 ntBASIC20.62■□□□□ 0.89
CACNA1FO60840 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CACNA1FO60840 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 AC106820.2-201ENST00000563775 3264 ntBASIC20.62■□□□□ 0.89
CACNA1FO60840 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.62■□□□□ 0.89
CACNA1FO60840 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CACNA1FO60840 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
CACNA1FO60840 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CACNA1FO60840 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CACNA1FO60840 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.61■□□□□ 0.89
CACNA1FO60840 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 CYP2T1P-202ENST00000641596 2535 ntBASIC20.61■□□□□ 0.89
CACNA1FO60840 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.61■□□□□ 0.89
CACNA1FO60840 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.61■□□□□ 0.89
CACNA1FO60840 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
CACNA1FO60840 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 AC026979.3-201ENST00000607315 403 ntBASIC20.61■□□□□ 0.89
CACNA1FO60840 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CACNA1FO60840 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.61■□□□□ 0.89
CACNA1FO60840 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CACNA1FO60840 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CACNA1FO60840 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.6■□□□□ 0.89
CACNA1FO60840 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms