Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 KRT18P3-201ENST00000451602 1288 ntBASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 MIR3909-201ENST00000579518 119 ntBASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 FAM197Y3-203ENST00000618346 717 ntBASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
AP4E1Q9UPM8 AC006449.5-201ENST00000610658 2098 ntBASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PCGF3-213ENST00000620529 1899 ntBASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AL022342.1-201ENST00000400363 863 ntBASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PMS2P4-201ENST00000412466 1052 ntBASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AC021097.1-201ENST00000607902 574 ntBASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
AP4E1Q9UPM8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 AL513190.1-201ENST00000621254 727 ntBASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 PCDH8P1-201ENST00000428983 2773 ntBASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
AP4E1Q9UPM8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
AP4E1Q9UPM8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms