Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 AL512356.2-201ENST00000546955 174 ntBASIC15.26■□□□□ 0.03
LRFN1Q9P244 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 AP000842.3-202ENST00000569238 1080 ntBASIC15.26■□□□□ 0.03
LRFN1Q9P244 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 AC084121.4-201ENST00000641598 221 ntBASIC15.26■□□□□ 0.03
LRFN1Q9P244 AF228730.8-201ENST00000642140 221 ntBASIC15.26■□□□□ 0.03
LRFN1Q9P244 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 PCDHB17P-201ENST00000539533 2393 ntBASIC15.26■□□□□ 0.03
LRFN1Q9P244 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
LRFN1Q9P244 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LRFN1Q9P244 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 SPDYE7P-202ENST00000420373 878 ntBASIC15.25■□□□□ 0.03
LRFN1Q9P244 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 AC026150.2-201ENST00000564693 1156 ntBASIC15.25■□□□□ 0.03
LRFN1Q9P244 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.25■□□□□ 0.03
LRFN1Q9P244 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LRFN1Q9P244 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 TUBB3P1-201ENST00000405796 1332 ntBASIC15.24■□□□□ 0.03
LRFN1Q9P244 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 PRORSD1P-202ENST00000563365 2154 ntBASIC15.24■□□□□ 0.03
LRFN1Q9P244 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LRFN1Q9P244 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 MIR346-201ENST00000362234 95 ntBASIC15.24■□□□□ 0.03
LRFN1Q9P244 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 AP002490.2-201ENST00000524791 560 ntBASIC15.24■□□□□ 0.03
LRFN1Q9P244 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 AL671710.1-201ENST00000610245 2349 ntBASIC15.24■□□□□ 0.03
LRFN1Q9P244 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.24■□□□□ 0.03
LRFN1Q9P244 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms