Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 BX842568.4-201ENST00000421222 227 ntBASIC17.7■□□□□ 0.42
CISHQ9NSE2 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.7■□□□□ 0.42
CISHQ9NSE2 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 WASH6P-202ENST00000359512 1437 ntBASIC17.7■□□□□ 0.42
CISHQ9NSE2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CISHQ9NSE2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.7■□□□□ 0.42
CISHQ9NSE2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 AL662844.4-201ENST00000606367 2838 ntBASIC17.69■□□□□ 0.42
CISHQ9NSE2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 HTR5BP-201ENST00000430851 1154 ntBASIC17.69■□□□□ 0.42
CISHQ9NSE2 DNAJB3-201ENST00000446806 729 ntBASIC17.69■□□□□ 0.42
CISHQ9NSE2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.69■□□□□ 0.42
CISHQ9NSE2 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CISHQ9NSE2 LINC01144-201ENST00000626198 1710 ntBASIC17.69■□□□□ 0.42
CISHQ9NSE2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.69■□□□□ 0.42
CISHQ9NSE2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 AL355306.1-201ENST00000415580 579 ntBASIC17.68■□□□□ 0.42
CISHQ9NSE2 MKNK2P1-201ENST00000437526 628 ntBASIC17.68■□□□□ 0.42
CISHQ9NSE2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CISHQ9NSE2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CISHQ9NSE2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms