Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AGER-214ENST00000538695 487 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 TIMM17BP1-201ENST00000545713 516 ntBASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 MIR3615-201ENST00000581999 87 ntBASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ZNF541Q9H0D2 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.64■□□□□ 0.74
ZNF541Q9H0D2 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
ZNF541Q9H0D2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF541Q9H0D2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF541Q9H0D2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF541Q9H0D2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 HIST3H2BA-201ENST00000436555 524 ntBASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 AL391069.4-201ENST00000609583 481 ntBASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 AL354751.1-201ENST00000412768 1863 ntBASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF541Q9H0D2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 TUBB8P12-201ENST00000308911 1335 ntBASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 TUBB7P-202ENST00000428444 1305 ntBASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 AC007551.1-201ENST00000457394 519 ntBASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 TUBB8P7-204ENST00000567960 1332 ntBASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF541Q9H0D2 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AL139010.1-201ENST00000454878 894 ntBASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 AC243960.2-201ENST00000600996 747 ntBASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 CU634019.7-201ENST00000624153 1185 ntBASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 FP236241.2-201ENST00000624906 1185 ntBASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF541Q9H0D2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms