Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 SERPINA13P-202ENST00000478994 924 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 FAM86KP-201ENST00000509817 987 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC120045.2-201ENST00000567334 178 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 LINC01115-203ENST00000606068 577 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AC007663.3-201ENST00000609632 465 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AL139327.4-201ENST00000612362 153 ntBASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL25A1Q9BXS0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 AC078991.1-201ENST00000437297 610 ntBASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.49■□□□□ 0.23
COL25A1Q9BXS0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 ACTG1P2-201ENST00000415776 1125 ntBASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 ACTG1P11-201ENST00000425411 1125 ntBASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 PIN4P1-201ENST00000451079 396 ntBASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 RPL13AP25-201ENST00000484130 612 ntBASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL25A1Q9BXS0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL25A1Q9BXS0 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms