Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.18■□□□□ 0.02
NPAS1Q99742 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
NPAS1Q99742 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.18■□□□□ 0.02
NPAS1Q99742 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.18■□□□□ 0.02
NPAS1Q99742 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.18■□□□□ 0.02
NPAS1Q99742 AC040169.1-201ENST00000565382 521 ntBASIC15.18■□□□□ 0.02
NPAS1Q99742 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
NPAS1Q99742 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.18■□□□□ 0.02
NPAS1Q99742 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 AC007064.4-201ENST00000637740 555 ntBASIC15.18■□□□□ 0.02
NPAS1Q99742 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.18■□□□□ 0.02
NPAS1Q99742 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
NPAS1Q99742 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NPAS1Q99742 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 AL512652.2-201ENST00000625156 1716 ntBASIC15.17■□□□□ 0.02
NPAS1Q99742 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.17■□□□□ 0.02
NPAS1Q99742 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 AL031432.2-201ENST00000566714 459 ntBASIC15.17■□□□□ 0.02
NPAS1Q99742 AL928711.1-201ENST00000570165 459 ntBASIC15.17■□□□□ 0.02
NPAS1Q99742 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
NPAS1Q99742 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
NPAS1Q99742 PKD1P1-201ENST00000458669 6805 ntBASIC15.17■□□□□ 0.02
NPAS1Q99742 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.17■□□□□ 0.02
NPAS1Q99742 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
NPAS1Q99742 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
NPAS1Q99742 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NPAS1Q99742 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NPAS1Q99742 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.16■□□□□ 0.02
NPAS1Q99742 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NPAS1Q99742 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.16■□□□□ 0.02
NPAS1Q99742 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.16■□□□□ 0.02
NPAS1Q99742 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NPAS1Q99742 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 AC005052.1-201ENST00000625181 2492 ntBASIC15.16■□□□□ 0.02
NPAS1Q99742 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 YBX2P1-201ENST00000394192 760 ntBASIC15.16■□□□□ 0.02
NPAS1Q99742 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 HCG4-201ENST00000418983 998 ntBASIC15.16■□□□□ 0.02
NPAS1Q99742 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.16■□□□□ 0.02
NPAS1Q99742 AC074386.1-202ENST00000463561 864 ntBASIC15.16■□□□□ 0.02
NPAS1Q99742 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.16■□□□□ 0.02
NPAS1Q99742 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.16■□□□□ 0.02
NPAS1Q99742 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.16■□□□□ 0.02
NPAS1Q99742 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
NPAS1Q99742 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NPAS1Q99742 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms