Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CCDC140Q96MF4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CROCCP1-201ENST00000426910 5675 ntBASIC12.86□□□□□ -0.35
CCDC140Q96MF4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AC140658.5-201ENST00000438532 169 ntBASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SERPINA7P1-201ENST00000443077 631 ntBASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CCDC140Q96MF4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 AC068137.2-201ENST00000605408 478 ntBASIC12.85□□□□□ -0.35
CCDC140Q96MF4 AC020765.3-201ENST00000613051 740 ntBASIC12.85□□□□□ -0.35
CCDC140Q96MF4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 AC092865.6-201ENST00000642101 219 ntBASIC12.85□□□□□ -0.35
CCDC140Q96MF4 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 LINC01144-201ENST00000626198 1710 ntBASIC12.85□□□□□ -0.35
CCDC140Q96MF4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC12.85□□□□□ -0.35
CCDC140Q96MF4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms