Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 AC093512.1-201ENST00000617969 520 ntBASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SHROOM3Q8TF72 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 FOXO1B-201ENST00000504678 1527 ntBASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SHROOM3Q8TF72 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 FAM185BP-201ENST00000443595 716 ntBASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 AC091812.2-201ENST00000619081 385 ntBASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 AP001350.2-201ENST00000625104 1094 ntBASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.89■□□□□ 0.3
SHROOM3Q8TF72 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 TFAMP1-201ENST00000412727 736 ntBASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 AC138761.1-201ENST00000584393 385 ntBASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHROOM3Q8TF72 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms