Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC020916.1-201ENST00000587762 1774 ntBASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 TP53TG3HP-202ENST00000569755 579 ntBASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NPAS3Q8IXF0 SNX33P1-201ENST00000592116 1762 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AC007274.1-201ENST00000439805 662 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AL079307.3-201ENST00000556114 283 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 AC007541.1-201ENST00000570282 1469 ntBASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NPAS3Q8IXF0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 KRT17P7-201ENST00000451704 1104 ntBASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 API5-211ENST00000534695 560 ntTSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 KRT8P39-201ENST00000396270 1433 ntBASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NPAS3Q8IXF0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms