Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 AC008735.5-201ENST00000623544 497 ntBASIC18.98■□□□□ 0.63
ATL3Q6DD88 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 AL592424.1-201ENST00000563624 1536 ntBASIC18.98■□□□□ 0.63
ATL3Q6DD88 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ATL3Q6DD88 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ATL3Q6DD88 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AC012569.1-201ENST00000591191 1524 ntBASIC18.97■□□□□ 0.63
ATL3Q6DD88 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AC073648.2-201ENST00000510116 352 ntBASIC18.97■□□□□ 0.63
ATL3Q6DD88 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 MIR1199-201ENST00000621445 119 ntBASIC18.97■□□□□ 0.63
ATL3Q6DD88 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
ATL3Q6DD88 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ATL3Q6DD88 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 RPS2P1-201ENST00000434010 821 ntBASIC18.96■□□□□ 0.63
ATL3Q6DD88 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.96■□□□□ 0.63
ATL3Q6DD88 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 MIR3909-201ENST00000579518 119 ntBASIC18.96■□□□□ 0.63
ATL3Q6DD88 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 CDC14C-201ENST00000428251 1719 ntBASIC18.96■□□□□ 0.63
ATL3Q6DD88 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.96■□□□□ 0.63
ATL3Q6DD88 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ATL3Q6DD88 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.62
ATL3Q6DD88 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 AC112504.1-201ENST00000623415 1841 ntBASIC18.95■□□□□ 0.62
ATL3Q6DD88 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
ATL3Q6DD88 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 MRPL20P1-201ENST00000400819 433 ntBASIC18.95■□□□□ 0.62
ATL3Q6DD88 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.95■□□□□ 0.62
ATL3Q6DD88 MIR1224-201ENST00000408193 85 ntBASIC18.95■□□□□ 0.62
ATL3Q6DD88 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms