Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.77□□□□□ -0.53
PRKDCP78527 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
PRKDCP78527 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC11.77□□□□□ -0.53
PRKDCP78527 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC11.77□□□□□ -0.53
PRKDCP78527 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC11.77□□□□□ -0.53
PRKDCP78527 AL645939.5-201ENST00000606834 243 ntBASIC11.77□□□□□ -0.53
PRKDCP78527 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC11.77□□□□□ -0.53
PRKDCP78527 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
PRKDCP78527 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.76□□□□□ -0.53
PRKDCP78527 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.76□□□□□ -0.53
PRKDCP78527 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC11.76□□□□□ -0.53
PRKDCP78527 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 AL451050.2-201ENST00000606967 682 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 RN7SL736P-201ENST00000613111 269 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
PRKDCP78527 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 Z97205.2-201ENST00000564697 1639 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
PRKDCP78527 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.76□□□□□ -0.53
PRKDCP78527 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
PRKDCP78527 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC11.76□□□□□ -0.53
PRKDCP78527 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 AHCYP2-201ENST00000430630 1300 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC11.76□□□□□ -0.53
PRKDCP78527 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC11.76□□□□□ -0.53
PRKDCP78527 MIR6069-201ENST00000620069 79 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 AC244452.3-201ENST00000636814 210 ntBASIC11.76□□□□□ -0.53
PRKDCP78527 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC11.76□□□□□ -0.53
PRKDCP78527 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
PRKDCP78527 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC11.76□□□□□ -0.53
PRKDCP78527 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 WIZP1-201ENST00000531444 2299 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 DEF8-202ENST00000418391 852 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 AC016694.1-201ENST00000434179 700 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 CTBP2P4-201ENST00000513884 920 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 MNT-208ENST00000575394 606 ntTSL 4 BASIC11.75□□□□□ -0.53
PRKDCP78527 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC11.75□□□□□ -0.53
PRKDCP78527 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC11.75□□□□□ -0.53
PRKDCP78527 EEF1DP1-201ENST00000585891 896 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.75□□□□□ -0.53
PRKDCP78527 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.75□□□□□ -0.53
PRKDCP78527 AL589702.1-201ENST00000641229 1509 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
PRKDCP78527 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC11.75□□□□□ -0.53
PRKDCP78527 FAM86LP-201ENST00000478302 853 ntBASIC11.75□□□□□ -0.53
PRKDCP78527 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC11.75□□□□□ -0.53
PRKDCP78527 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms