Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
HDAC4P56524 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC4P56524 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
HDAC4P56524 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
HDAC4P56524 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC4P56524 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
HDAC4P56524 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC4P56524 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC4P56524 AC025580.3-201ENST00000617932 1424 ntBASIC17.39■□□□□ 0.38
HDAC4P56524 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HDAC4P56524 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 GGT3P-204ENST00000453783 1664 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
HDAC4P56524 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 RNU1-129P-201ENST00000384064 167 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 MED15P5-201ENST00000423150 992 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.39■□□□□ 0.37
HDAC4P56524 U1.21-201ENST00000580816 167 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 AC023141.13-201ENST00000604991 943 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 PCDHB19P-201ENST00000570871 2371 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HDAC4P56524 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.39■□□□□ 0.37
HDAC4P56524 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HDAC4P56524 AC079328.2-201ENST00000561241 3354 ntBASIC17.39■□□□□ 0.37
HDAC4P56524 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.38■□□□□ 0.37
HDAC4P56524 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 AC005052.1-201ENST00000625181 2492 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HDAC4P56524 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDAC4P56524 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC4P56524 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.38■□□□□ 0.37
HDAC4P56524 AL022342.1-201ENST00000400363 863 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDAC4P56524 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.38■□□□□ 0.37
HDAC4P56524 AL591424.1-201ENST00000442569 1213 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 KRT18P3-201ENST00000451602 1288 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.38■□□□□ 0.37
HDAC4P56524 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
HDAC4P56524 KRT19P2-202ENST00000557173 1012 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
HDAC4P56524 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 FAM197Y3-203ENST00000618346 717 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 AC007064.4-201ENST00000637740 555 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDAC4P56524 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HDAC4P56524 BCAR1-209ENST00000546196 1340 ntBASIC17.38■□□□□ 0.37
HDAC4P56524 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
HDAC4P56524 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HDAC4P56524 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.38■□□□□ 0.37
HDAC4P56524 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HDAC4P56524 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HDAC4P56524 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC4P56524 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC4P56524 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms