Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 AP005117.1-202ENST00000581724 1908 ntBASIC12.56□□□□□ -0.4
FOXA3P55318 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA3P55318 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA3P55318 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
FOXA3P55318 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA3P55318 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.55□□□□□ -0.4
FOXA3P55318 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
FOXA3P55318 MIR1238-201ENST00000408483 83 ntBASIC12.55□□□□□ -0.4
FOXA3P55318 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 ECEL1P2-202ENST00000465689 757 ntBASIC12.55□□□□□ -0.4
FOXA3P55318 AP003733.1-201ENST00000491725 852 ntBASIC12.55□□□□□ -0.4
FOXA3P55318 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 AC092666.2-201ENST00000613287 246 ntBASIC12.55□□□□□ -0.4
FOXA3P55318 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA3P55318 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 ST20-AS1-201ENST00000560255 4223 ntBASIC12.55□□□□□ -0.4
FOXA3P55318 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA3P55318 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA3P55318 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA3P55318 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA3P55318 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA3P55318 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
FOXA3P55318 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA3P55318 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms