Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.13■□□□□ 0.17
FOXA1P55317 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
FOXA1P55317 RPS2P1-201ENST00000434010 821 ntBASIC16.13■□□□□ 0.17
FOXA1P55317 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA1P55317 AC006557.2-201ENST00000592985 1240 ntBASIC16.13■□□□□ 0.17
FOXA1P55317 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.13■□□□□ 0.17
FOXA1P55317 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 AL353732.1-201ENST00000569618 1459 ntBASIC16.13■□□□□ 0.17
FOXA1P55317 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
FOXA1P55317 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
FOXA1P55317 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA1P55317 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA1P55317 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.13■□□□□ 0.17
FOXA1P55317 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA1P55317 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA1P55317 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA1P55317 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA1P55317 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA1P55317 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.12■□□□□ 0.17
FOXA1P55317 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.12■□□□□ 0.17
FOXA1P55317 DUSP5P1-201ENST00000441325 1139 ntBASIC16.12■□□□□ 0.17
FOXA1P55317 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.12■□□□□ 0.17
FOXA1P55317 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA1P55317 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA1P55317 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA1P55317 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA1P55317 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.11■□□□□ 0.17
FOXA1P55317 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.11■□□□□ 0.17
FOXA1P55317 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA1P55317 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.11■□□□□ 0.17
FOXA1P55317 IFNL4P1-201ENST00000607083 540 ntBASIC16.11■□□□□ 0.17
FOXA1P55317 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.11■□□□□ 0.17
FOXA1P55317 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.11■□□□□ 0.17
FOXA1P55317 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
FOXA1P55317 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA1P55317 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
FOXA1P55317 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms