Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.84■□□□□ 0.45
VCPP55072 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.84■□□□□ 0.45
VCPP55072 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.84■□□□□ 0.45
VCPP55072 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.84■□□□□ 0.45
VCPP55072 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.84■□□□□ 0.45
VCPP55072 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.84■□□□□ 0.45
VCPP55072 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.84■□□□□ 0.45
VCPP55072 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
VCPP55072 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 AC009093.7-201ENST00000623853 1223 ntBASIC17.84■□□□□ 0.45
VCPP55072 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.84■□□□□ 0.45
VCPP55072 AL805961.1-202ENST00000641562 540 ntBASIC17.84■□□□□ 0.45
VCPP55072 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VCPP55072 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
VCPP55072 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.84■□□□□ 0.45
VCPP55072 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.83■□□□□ 0.45
VCPP55072 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VCPP55072 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VCPP55072 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VCPP55072 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 AP002414.1-201ENST00000391405 1147 ntBASIC17.83■□□□□ 0.44
VCPP55072 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.83■□□□□ 0.44
VCPP55072 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.83■□□□□ 0.44
VCPP55072 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.83■□□□□ 0.44
VCPP55072 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.83■□□□□ 0.44
VCPP55072 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.83■□□□□ 0.44
VCPP55072 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.83■□□□□ 0.44
VCPP55072 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.83■□□□□ 0.44
VCPP55072 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.83■□□□□ 0.44
VCPP55072 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 LINC02560-201ENST00000596379 459 ntBASIC17.83■□□□□ 0.44
VCPP55072 AC068137.2-201ENST00000605408 478 ntBASIC17.83■□□□□ 0.44
VCPP55072 MIR6752-201ENST00000618442 71 ntBASIC17.83■□□□□ 0.44
VCPP55072 AC008761.3-201ENST00000624803 892 ntBASIC17.83■□□□□ 0.44
VCPP55072 AC007064.4-201ENST00000637740 555 ntBASIC17.83■□□□□ 0.44
VCPP55072 RNF216P1-203ENST00000404404 2427 ntBASIC17.83■□□□□ 0.44
VCPP55072 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.83■□□□□ 0.44
VCPP55072 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.83■□□□□ 0.44
VCPP55072 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VCPP55072 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
VCPP55072 AL139384.1-201ENST00000612143 3047 ntBASIC17.82■□□□□ 0.44
VCPP55072 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 AC078925.2-201ENST00000624013 1973 ntBASIC17.82■□□□□ 0.44
VCPP55072 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VCPP55072 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.82■□□□□ 0.44
VCPP55072 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.82■□□□□ 0.44
VCPP55072 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VCPP55072 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VCPP55072 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 AL627223.1-201ENST00000416693 442 ntBASIC17.82■□□□□ 0.44
VCPP55072 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.82■□□□□ 0.44
VCPP55072 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.82■□□□□ 0.44
VCPP55072 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VCPP55072 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
VCPP55072 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCPP55072 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms