Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.39■□□□□ 0.21
LIMK1P53667 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.39■□□□□ 0.21
LIMK1P53667 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.39■□□□□ 0.21
LIMK1P53667 AL844908.2-201ENST00000609461 460 ntBASIC16.39■□□□□ 0.21
LIMK1P53667 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
LIMK1P53667 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
LIMK1P53667 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.39■□□□□ 0.21
LIMK1P53667 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIMK1P53667 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 AP3S2-216ENST00000617003 1561 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.38■□□□□ 0.21
LIMK1P53667 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
LIMK1P53667 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.38■□□□□ 0.21
LIMK1P53667 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.38■□□□□ 0.21
LIMK1P53667 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.38■□□□□ 0.21
LIMK1P53667 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LIMK1P53667 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 BTBD7P1-201ENST00000447253 1453 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
LIMK1P53667 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LIMK1P53667 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.38■□□□□ 0.21
LIMK1P53667 AC105233.2-201ENST00000523697 349 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 FAM8A2P-201ENST00000528813 1142 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 AF228730.5-201ENST00000530288 346 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.38■□□□□ 0.21
LIMK1P53667 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.38■□□□□ 0.21
LIMK1P53667 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.38■□□□□ 0.21
LIMK1P53667 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
LIMK1P53667 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 TEX28P1-201ENST00000613479 1221 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 TEX28P2-201ENST00000617764 1221 ntBASIC16.38■□□□□ 0.21
LIMK1P53667 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
LIMK1P53667 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIMK1P53667 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIMK1P53667 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
LIMK1P53667 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.37■□□□□ 0.21
LIMK1P53667 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LIMK1P53667 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.37■□□□□ 0.21
LIMK1P53667 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.37■□□□□ 0.21
LIMK1P53667 ZNF890P-202ENST00000530367 1156 ntBASIC16.37■□□□□ 0.21
LIMK1P53667 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.37■□□□□ 0.21
LIMK1P53667 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 AL033527.4-201ENST00000641026 673 ntBASIC16.37■□□□□ 0.21
LIMK1P53667 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LIMK1P53667 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LIMK1P53667 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms